From 670525ac52300e7763f80e14e0e1b3e633a2d5dc Mon Sep 17 00:00:00 2001
From: josemduarte <jose.m.duarte@gmail.com>
Date: Tue, 5 May 2026 15:22:44 -0700
Subject: [PATCH 1/2] [maven-release-plugin] prepare for next development
 iteration

---
 biojava-aa-prop/pom.xml                 |  6 +++---
 biojava-alignment/pom.xml               |  4 ++--
 biojava-core/pom.xml                    |  2 +-
 biojava-genome/pom.xml                  |  6 +++---
 biojava-integrationtest/pom.xml         |  4 ++--
 biojava-modfinder/pom.xml               |  4 ++--
 biojava-ontology/pom.xml                |  2 +-
 biojava-protein-comparison-tool/pom.xml | 10 +++++-----
 biojava-protein-disorder/pom.xml        |  4 ++--
 biojava-structure-gui/pom.xml           |  6 +++---
 biojava-structure/pom.xml               |  6 +++---
 biojava-survival/pom.xml                |  2 +-
 biojava-ws/pom.xml                      |  4 ++--
 pom.xml                                 |  4 ++--
 14 files changed, 32 insertions(+), 32 deletions(-)

diff --git a/biojava-aa-prop/pom.xml b/biojava-aa-prop/pom.xml
index ca38a3aacc..1209448b5f 100644
--- a/biojava-aa-prop/pom.xml
+++ b/biojava-aa-prop/pom.xml
@@ -2,7 +2,7 @@
 	<parent>
 		<artifactId>biojava</artifactId>
 		<groupId>org.biojava</groupId>
-		<version>7.2.5</version>
+		<version>7.2.6-SNAPSHOT</version>
 	</parent>
 	<modelVersion>4.0.0</modelVersion>
 	<artifactId>biojava-aa-prop</artifactId>
@@ -70,12 +70,12 @@
 		<dependency>
 			<groupId>org.biojava</groupId>
 			<artifactId>biojava-core</artifactId>
-			<version>7.2.5</version>
+			<version>7.2.6-SNAPSHOT</version>
 		</dependency>
 		<dependency>
 			<groupId>org.biojava</groupId>
 			<artifactId>biojava-structure</artifactId>
-			<version>7.2.5</version>
+			<version>7.2.6-SNAPSHOT</version>
 		</dependency>
 
 		<!-- logging dependencies (managed by parent pom, don't set versions or scopes here) -->
diff --git a/biojava-alignment/pom.xml b/biojava-alignment/pom.xml
index f73fa949c0..6f57e23426 100644
--- a/biojava-alignment/pom.xml
+++ b/biojava-alignment/pom.xml
@@ -4,7 +4,7 @@
 	<parent>
 		<artifactId>biojava</artifactId>
 		<groupId>org.biojava</groupId>
-		<version>7.2.5</version>
+		<version>7.2.6-SNAPSHOT</version>
 	</parent>
 	<artifactId>biojava-alignment</artifactId>
 	<name>biojava-alignment</name>
@@ -47,7 +47,7 @@
 		<dependency>
 			<groupId>org.biojava</groupId>
 			<artifactId>biojava-core</artifactId>
-			<version>7.2.5</version>
+			<version>7.2.6-SNAPSHOT</version>
 			<scope>compile</scope>
 		</dependency>
 		<dependency>
diff --git a/biojava-core/pom.xml b/biojava-core/pom.xml
index cb7f3b5208..3ad7189c9e 100644
--- a/biojava-core/pom.xml
+++ b/biojava-core/pom.xml
@@ -3,7 +3,7 @@
 	<parent>
 		<artifactId>biojava</artifactId>
 		<groupId>org.biojava</groupId>
-		<version>7.2.5</version>
+		<version>7.2.6-SNAPSHOT</version>
 	</parent>
 	<modelVersion>4.0.0</modelVersion>
 	<artifactId>biojava-core</artifactId>
diff --git a/biojava-genome/pom.xml b/biojava-genome/pom.xml
index aca993304f..698fa280c7 100644
--- a/biojava-genome/pom.xml
+++ b/biojava-genome/pom.xml
@@ -3,7 +3,7 @@
 	<parent>
 		<artifactId>biojava</artifactId>
 		<groupId>org.biojava</groupId>
-		<version>7.2.5</version>
+		<version>7.2.6-SNAPSHOT</version>
 	</parent>
 	<modelVersion>4.0.0</modelVersion>
 	<artifactId>biojava-genome</artifactId>
@@ -70,13 +70,13 @@
 		<dependency>
 			<groupId>org.biojava</groupId>
 			<artifactId>biojava-core</artifactId>
-			<version>7.2.5</version>
+			<version>7.2.6-SNAPSHOT</version>
 			<scope>compile</scope>
 		</dependency>
 		<dependency>
 			<groupId>org.biojava</groupId>
 			<artifactId>biojava-alignment</artifactId>
-			<version>7.2.5</version>
+			<version>7.2.6-SNAPSHOT</version>
 			<scope>compile</scope>
 		</dependency>
 		<dependency>
diff --git a/biojava-integrationtest/pom.xml b/biojava-integrationtest/pom.xml
index e3d4122962..349393cfa6 100644
--- a/biojava-integrationtest/pom.xml
+++ b/biojava-integrationtest/pom.xml
@@ -4,7 +4,7 @@
   <parent>
     <artifactId>biojava</artifactId>
     <groupId>org.biojava</groupId>
-    <version>7.2.5</version>
+    <version>7.2.6-SNAPSHOT</version>
   </parent>
   <artifactId>biojava-integrationtest</artifactId>
   <packaging>jar</packaging>
@@ -40,7 +40,7 @@
     <dependency>
     	<groupId>org.biojava</groupId>
     	<artifactId>biojava-structure</artifactId>
-    	<version>7.2.5</version>
+    	<version>7.2.6-SNAPSHOT</version>
     </dependency>
 		<!-- logging dependencies (managed by parent pom, don't set versions or scopes here) -->
 		<dependency>
diff --git a/biojava-modfinder/pom.xml b/biojava-modfinder/pom.xml
index fbc0c89ad6..cec4445407 100644
--- a/biojava-modfinder/pom.xml
+++ b/biojava-modfinder/pom.xml
@@ -4,7 +4,7 @@
 	<parent>
 		<artifactId>biojava</artifactId>
 		<groupId>org.biojava</groupId>
-		<version>7.2.5</version>
+		<version>7.2.6-SNAPSHOT</version>
 	</parent>
 	<artifactId>biojava-modfinder</artifactId>
 	<name>biojava-modfinder</name>
@@ -31,7 +31,7 @@
 		<dependency>
 			<groupId>org.biojava</groupId>
 			<artifactId>biojava-structure</artifactId>
-			<version>7.2.5</version>
+			<version>7.2.6-SNAPSHOT</version>
 			<type>jar</type>
 			<scope>compile</scope>
 		</dependency>
diff --git a/biojava-ontology/pom.xml b/biojava-ontology/pom.xml
index f99f80e60c..dff3450bc9 100644
--- a/biojava-ontology/pom.xml
+++ b/biojava-ontology/pom.xml
@@ -4,7 +4,7 @@
   <parent>
     <groupId>org.biojava</groupId>
     <artifactId>biojava</artifactId>
-    <version>7.2.5</version>
+    <version>7.2.6-SNAPSHOT</version>
   </parent>
 
   <artifactId>biojava-ontology</artifactId>
diff --git a/biojava-protein-comparison-tool/pom.xml b/biojava-protein-comparison-tool/pom.xml
index cf5b3181fc..3b43bc492d 100644
--- a/biojava-protein-comparison-tool/pom.xml
+++ b/biojava-protein-comparison-tool/pom.xml
@@ -4,7 +4,7 @@
 	<parent>
 		<artifactId>biojava</artifactId>
 		<groupId>org.biojava</groupId>
-		<version>7.2.5</version>
+		<version>7.2.6-SNAPSHOT</version>
 	</parent>
 
 	<artifactId>biojava-protein-comparison-tool</artifactId>
@@ -36,23 +36,23 @@
 		<dependency>
 			<groupId>org.biojava</groupId>
 			<artifactId>biojava-alignment</artifactId>
-			<version>7.2.5</version>
+			<version>7.2.6-SNAPSHOT</version>
 
 		</dependency>
 		<dependency>
 			<groupId>org.biojava</groupId>
 			<artifactId>biojava-core</artifactId>
-			<version>7.2.5</version>
+			<version>7.2.6-SNAPSHOT</version>
 		</dependency>
 		<dependency>
 			<groupId>org.biojava</groupId>
 			<artifactId>biojava-structure</artifactId>
-			<version>7.2.5</version>
+			<version>7.2.6-SNAPSHOT</version>
 		</dependency>
 		<dependency>
 			<groupId>org.biojava</groupId>
 			<artifactId>biojava-structure-gui</artifactId>
-			<version>7.2.5</version>
+			<version>7.2.6-SNAPSHOT</version>
 		</dependency>
 		<dependency>
 			<groupId>net.sourceforge.jmol</groupId>
diff --git a/biojava-protein-disorder/pom.xml b/biojava-protein-disorder/pom.xml
index 5fe23d98ea..d0267a7519 100644
--- a/biojava-protein-disorder/pom.xml
+++ b/biojava-protein-disorder/pom.xml
@@ -3,7 +3,7 @@
 	<parent>
 		<artifactId>biojava</artifactId>
 		<groupId>org.biojava</groupId>
-		<version>7.2.5</version>
+		<version>7.2.6-SNAPSHOT</version>
 	</parent>
 	<artifactId>biojava-protein-disorder</artifactId>
 	<packaging>jar</packaging>
@@ -63,7 +63,7 @@
 		<dependency>
 			<groupId>org.biojava</groupId>
 			<artifactId>biojava-core</artifactId>
-			<version>7.2.5</version>
+			<version>7.2.6-SNAPSHOT</version>
 		</dependency>
 		<!-- logging dependencies (managed by parent pom, don't set versions or
 			scopes here) -->
diff --git a/biojava-structure-gui/pom.xml b/biojava-structure-gui/pom.xml
index 36d676b671..314c32bf16 100644
--- a/biojava-structure-gui/pom.xml
+++ b/biojava-structure-gui/pom.xml
@@ -3,7 +3,7 @@
     <parent>
         <artifactId>biojava</artifactId>
         <groupId>org.biojava</groupId>
-		<version>7.2.5</version>
+		<version>7.2.6-SNAPSHOT</version>
     </parent>
     <modelVersion>4.0.0</modelVersion>
     <artifactId>biojava-structure-gui</artifactId>
@@ -27,13 +27,13 @@
         <dependency>
             <groupId>org.biojava</groupId>
             <artifactId>biojava-structure</artifactId>
-			<version>7.2.5</version>
+			<version>7.2.6-SNAPSHOT</version>
             <scope>compile</scope>
         </dependency>
         <dependency>
             <groupId>org.biojava</groupId>
             <artifactId>biojava-core</artifactId>
-			<version>7.2.5</version>
+			<version>7.2.6-SNAPSHOT</version>
             <scope>compile</scope>
         </dependency>
 
diff --git a/biojava-structure/pom.xml b/biojava-structure/pom.xml
index 6c70ab9c58..c80a8490bd 100644
--- a/biojava-structure/pom.xml
+++ b/biojava-structure/pom.xml
@@ -4,7 +4,7 @@
 	<parent>
 		<artifactId>biojava</artifactId>
 		<groupId>org.biojava</groupId>
-		<version>7.2.5</version>
+		<version>7.2.6-SNAPSHOT</version>
 	</parent>
 	<artifactId>biojava-structure</artifactId>
 	<name>biojava-structure</name>
@@ -51,13 +51,13 @@
 		<dependency>
 			<groupId>org.biojava</groupId>
 			<artifactId>biojava-alignment</artifactId>
-			<version>7.2.5</version>
+			<version>7.2.6-SNAPSHOT</version>
 			<scope>compile</scope>
 		</dependency>
 		<dependency>
 			<groupId>org.biojava</groupId>
 			<artifactId>biojava-core</artifactId>
-			<version>7.2.5</version>
+			<version>7.2.6-SNAPSHOT</version>
 			<scope>compile</scope>
 		</dependency>
 
diff --git a/biojava-survival/pom.xml b/biojava-survival/pom.xml
index e4ae967a4e..a8c8616fa1 100644
--- a/biojava-survival/pom.xml
+++ b/biojava-survival/pom.xml
@@ -4,7 +4,7 @@
     <parent>
         <groupId>org.biojava</groupId>
         <artifactId>biojava</artifactId>
-        <version>7.2.5</version>
+        <version>7.2.6-SNAPSHOT</version>
     </parent>
 
     <artifactId>biojava-survival</artifactId>
diff --git a/biojava-ws/pom.xml b/biojava-ws/pom.xml
index 920c77414d..eafd87dff8 100644
--- a/biojava-ws/pom.xml
+++ b/biojava-ws/pom.xml
@@ -3,7 +3,7 @@
 	<parent>
 		<artifactId>biojava</artifactId>
 		<groupId>org.biojava</groupId>
-		<version>7.2.5</version>
+		<version>7.2.6-SNAPSHOT</version>
 	</parent>
 	<artifactId>biojava-ws</artifactId>
 	<name>biojava-ws</name>
@@ -19,7 +19,7 @@
 		<dependency>
 			<groupId>org.biojava</groupId>
 			<artifactId>biojava-core</artifactId>
-			<version>7.2.5</version>
+			<version>7.2.6-SNAPSHOT</version>
 			<scope>compile</scope>
 		</dependency>
 		<dependency>
diff --git a/pom.xml b/pom.xml
index 94ef570778..9fae069ae0 100644
--- a/pom.xml
+++ b/pom.xml
@@ -12,7 +12,7 @@
 	<groupId>org.biojava</groupId>
 	<artifactId>biojava</artifactId>
 	<packaging>pom</packaging>
-	<version>7.2.5</version>
+	<version>7.2.6-SNAPSHOT</version>
 	<name>biojava</name>
 	<description>BioJava is an open-source project dedicated to providing a Java framework for processing biological
         data. It provides analytical and statistical routines, parsers for common file formats and allows the
@@ -51,7 +51,7 @@
 		<developerConnection>scm:git:git@github.com:biojava/biojava.git</developerConnection>
 		<url>https://github.com/biojava/biojava</url>
 
-		<tag>biojava-7.2.5</tag>
+		<tag>HEAD</tag>
 	</scm>
 
 	<!-- This section required for release at Maven Central. For a full list

From e3d58c033f681ef2d6dda1ffa6621c533ad8d26b Mon Sep 17 00:00:00 2001
From: josemduarte <jose.m.duarte@gmail.com>
Date: Tue, 5 May 2026 15:38:44 -0700
Subject: [PATCH 2/2] Updating after release

---
 CHANGELOG.md | 8 ++++++++
 README.md    | 4 ++--
 2 files changed, 10 insertions(+), 2 deletions(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 9610b211df..aa0cc2b686 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,6 +1,14 @@
 BioJava Changelog
 -----------------
 
+BioJava 7.2.5
+==============================
+### Fixed
+* Fix NPE in Structure.toMMCIF() for some PDB entries (e.g. 2G10)
+* Maven plugin duplication in main pom.xml
+* Fixes for SonarQube S1155
+* Some library upgrades
+
 BioJava 7.2.4
 ==============================
 ### Fixed
diff --git a/README.md b/README.md
index eddeb65379..5c4b8f6ed2 100644
--- a/README.md
+++ b/README.md
@@ -1,7 +1,7 @@
 # Welcome to <img src="iframe.php?url=https%3A%2F%2Fgithub.com%2Flogo-full.png" height="35"/>
 
 ![Build](https://github.com/biojava/biojava/actions/workflows/master.yml/badge.svg)
-[![Version](http://img.shields.io/badge/version-7.2.4-blue.svg?style=flat)](https://github.com/biojava/biojava/releases/tag/biojava-7.2.4) [![License](http://img.shields.io/badge/license-LGPL_2.1-blue.svg?style=flat)](https://github.com/biojava/biojava/blob/master/LICENSE) [![Join the chat at https://gitter.im/biojava/biojava](https://badges.gitter.im/biojava/biojava.svg)](https://gitter.im/biojava/biojava?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge)
+[![Version](http://img.shields.io/badge/version-7.2.5-blue.svg?style=flat)](https://github.com/biojava/biojava/releases/tag/biojava-7.2.5) [![License](http://img.shields.io/badge/license-LGPL_2.1-blue.svg?style=flat)](https://github.com/biojava/biojava/blob/master/LICENSE) [![Join the chat at https://gitter.im/biojava/biojava](https://badges.gitter.im/biojava/biojava.svg)](https://gitter.im/biojava/biojava?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge)
 
 
 BioJava is an open-source project dedicated to providing a Java framework for **processing biological data**. It provides analytical and statistical routines, parsers for common file formats, reference implementations of popular algorithms, and allows the manipulation of sequences and 3D structures. The goal of the biojava project is to facilitate rapid application development for bioinformatics.
@@ -29,7 +29,7 @@ If you are using Maven you can add the BioJava repository by adding the followin
       <dependency>
         <groupId>org.biojava</groupId>
         <artifactId>biojava-core</artifactId>
-        <version>7.2.4</version>
+        <version>7.2.5</version>
       </dependency>
       <!-- other biojava modules as needed -->
     </dependencies>