package org.trial.debug;

import java.io.IOException;
import org.biojava.nbio.structure.Structure;
import org.biojava.nbio.structure.StructureException;
import org.biojava.nbio.structure.align.util.AtomCache;

public class DebugBioJava {
    public static void main(String[] args) throws IOException, StructureException{
        String pdbId = "1S32";
        AtomCache cache = new AtomCache();
        Structure s = cache.getStructure(pdbId);
    }
}

    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:497)
    at org.codehaus.mojo.exec.ExecJavaMojo$1.run(ExecJavaMojo.java:293)
    at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.NumberFormatException: For input string: "."
    at java.lang.NumberFormatException.forInputString(NumberFormatException.java:65)
    at java.lang.Integer.parseInt(Integer.java:569)
    at java.lang.Integer.parseInt(Integer.java:615)
    at org.biojava.nbio.structure.io.mmcif.SimpleMMcifParser.buildObject(SimpleMMcifParser.java:1002)
    at org.biojava.nbio.structure.io.mmcif.SimpleMMcifParser.endLineChecks(SimpleMMcifParser.java:649)
    at org.biojava.nbio.structure.io.mmcif.SimpleMMcifParser.parse(SimpleMMcifParser.java:278)
    at org.biojava.nbio.structure.io.MMCIFFileReader.getStructure(MMCIFFileReader.java:111)
    at org.biojava.nbio.structure.io.LocalPDBDirectory.getStructureById(LocalPDBDirectory.java:345)
    at org.biojava.nbio.structure.align.util.AtomCache.loadStructureFromCifByPdbId(AtomCache.java:1191)
    at org.biojava.nbio.structure.align.util.AtomCache.getStructure(AtomCache.java:386)
    at org.biojava.nbio.structure.StructureIO.getStructure(StructureIO.java:103)```