Commits

Commits on Jul 30, 2026

Better error reporting on invalid --samples file, don't segfault
pd3
committed

Commits on Jul 23, 2026

Ignore git safe.directory warnings in VERSION query

jkbonfield
authored and
pd3
committed
Fix version.sh to work on a git clone without git executable.

jkbonfield
authored and
pd3
committed
Fix plot-vcfstats to work on uncompressed data.

jkbonfield
authored and
pd3
committed
Add more CI tests for linux containers and BSD/Solaris VMs

jkbonfield
authored and
pd3
committed
Add concurrency checks to the older linux/mac/windows CI tests

jkbonfield
authored and
pd3
committed

Commits on Jul 13, 2026

Read compressed vchk files
pd3
committed

Commits on Jul 9, 2026

Commits on Jul 8, 2026

Make gtcheck use a stable sort for "idbl"

jkbonfield
authored and
pd3
committed

Commits on Jul 6, 2026

Make reglist_sort_() stable

daviesrob
authored and
pd3
committed

Commits on Jul 2, 2026

Changed the version copyright date.

whitwham
authored and
pd3
committed

Commits on Jun 23, 2026

Change sort order for trio-dnm3 test file

daviesrob
authored and
whitwham
committed

Commits on Jun 18, 2026

Ensure PACKAGE_VERSION is set in the Makefile

daviesrob
authored and
pd3
committed

Commits on Jun 16, 2026

Portability improvements for vcfstats.c

jmarshall
authored and
pd3
committed
Fix trivial typo [minor]

jmarshall
authored and
pd3
committed
Fix Makefile dependencies [minor]

jmarshall
authored and
pd3
committed
Allow for clock() returning floating point [minor]

jmarshall
authored and
pd3
committed
Update man page
pd3
committed
Fix the -v/V, --types/--exclude-types option to work with ref
pd3
committed
Fix a minor memory leak: close severity file when done
pd3
committed
Merge branch 'develop' of github.com:samtools/bcftools into develop
pd3
committed
Add support for SnpEff output
pd3
committed

Commits on Jun 3, 2026

Commits on Jun 1, 2026

Commits on May 22, 2026

Add a new -G, --greedy option
pd3
committed

Commits on May 21, 2026

[Minor] fix typos, add comments
pd3
committed

Commits on May 20, 2026

Commits on May 19, 2026

Fix sex handling and report non-error trio states
pd3
committed

Commits on May 18, 2026

Fix a start_lost issue in haplotype mode
pd3
committed

Commits on May 14, 2026

Add a CONTRIBUTING file
daviesrob
committed