Integration tests and reference examples for all external scientific data vendors used by Cyto.
This project implements a distributed streaming pipeline for multi-omics breast cancer data analysis, integrating TCGA, CPTAC genomics and proteomics data for real time processing with Apache Kafka and multi-omics integration for comprehensive cancer analysis
Integrative clinical breast cancer proteomics project using CPTAC, TCGA, and GSE176078 to characterize TNBC-associated protein changes and validate candidate biomarkers.
Personal profile repository for Vladimir Mitev, Founder and CEO of Helena Bioinformatics.
End-to-end bulk RNA-seq differential expression pipeline for breast cancer using real public transcriptomics data, automated GDC download, QC, statistical testing, and visualisation.
A reproducible multi-omics bioinformatics workflow for investigating extracellular matrix-associated molecular signatures in pancreatic ductal adenocarcinoma.
Spearman correlation and Random Forest analysis of RNA-protein coupling on CPTAC-BRCA multi-omics data, quantifying how copy-number adds predictive signal beyond mRNA.
Data transformation and integration service between CPTAC BCR and CDR.
Multi Omics in R & Python (QBIO 490)
Reproducible analysis release for developmental regulons in endometrial carcinoma.
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